EzCatDB

R L C P
Hierarchic Classification of Catalytic Mechanisms


R 3.-.-.- : Transfer (bond cleavage and new bond formation) (Reaction)

L 3.1147.-.- : Acyl group from Sulfur atom to Amine nitrogen (sp3) (Ligand group involved)

C 3.1147.47600.- : NMT-like mechanism (Base/Modulator-Stabilizer/Stabilizer); Modulator-assisted base activation of acceptor group & Another modulator-assisted activation of transferred group; Activated acceptor group stabilized; Activated acceptor group attacks on transferred group leading to transition-state formation; Transition-state stabilization; Substrate-assisted acid protonation to leaving group (Catalytic mechanism)


1st Nucleophile : an acceptor group in substrate
Catalytic groups : groups in residue/substrate
General Base : a catalytic residue
General Acid : a group in substrate/cofactor

Residues/Cofactors involved in Proteins

  • 3.1147.47600.180 : C-terminal carboxylate + Asn + mainchain amide groups + Thr or Ser + mainchain carbonyl
  • Copyright: Nozomi Nagano, JST & CBRC-AIST
    Funded by PRESTO/Japan Science and Technology Agency (JST) (December 2001 - November 2004)
    Funded by Grant-in-Aid for Publication of Scientific Research Results/Japan Society for the Promotion of Science (JSPS) (April 2005 - March 2006)
    Funded by Grant-in-Aid for Scientific Research (B)/Japan Society for the Promotion of Science (JSPS) (April 2005 - March 2008)
    Funded by BIRD/Japan Science and Technology Agency (JST) (September 2005 - September 2008)
    Funded by BIRD/Japan Science and Technology Agency (JST) (October 2007 - September 2010)
    Funded by Grant-in-Aid for Publication of Scientific Research Results/Japan Society for the Promotion of Science (JSPS) (April 2011 - March 2012)
    Funded by Grant-in-Aid for Publication of Scientific Research Results/Japan Society for the Promotion of Science (JSPS) (April 2012 - March 2013)
    Supported by the commission for the Development of Artificial Gene Synthesis Technology for Creating Innovative Biomaterial from the Ministry of Economy, Trade and Industry (METI) (October 2012 - March 2016)
    Funded by the project commissioned by the New Energy and Industrial Technology Development Organization (NEDO) (April 2016 -)