EzCatDB

R L C P
Hierarchic Classification of Catalytic Mechanisms


R 3.-.-.- : Transfer (bond cleavage and new bond formation) (Reaction)

L 3.900.-.- : Glycosyl group from Hydroxyl oxygen to Hydroxyl oxygen (Ligand group involved)


Catalytic mechanisms

  • 3.900.45300.- : Anhydrosialidase-like mechanism (Acid-Base-Stabilizer/Stabilizer/Modulator); SN1-like reaction; Modulator assists bond cleavage between transferred group and leaving group; Acid protonation to leaving group leads to departure of leaving group; Intermediate (transferred group) stabilized; Base-activation of acceptor group; Activated acceptor attacks on transferred group
  • 3.900.275800.- : Cyclodextrin-glycosyltransferase-like mechanism (Nucleophile/Acid-Base/Stabilizer-Modulator); SN1-like reaction; Modulator-assisted acid protonation to leaving group; Transition-state stabilized; Nucleophile attacks on transferred group; Covalent intermediate formation; Base deprotonation of acceptor group; Modulator-assisted acid protonation to leaving group again; Transition-state stabilized; Acceptor group attacks on transferred group
  • Copyright: Nozomi Nagano, JST & CBRC-AIST
    Funded by PRESTO/Japan Science and Technology Agency (JST) (December 2001 - November 2004)
    Funded by Grant-in-Aid for Publication of Scientific Research Results/Japan Society for the Promotion of Science (JSPS) (April 2005 - March 2006)
    Funded by Grant-in-Aid for Scientific Research (B)/Japan Society for the Promotion of Science (JSPS) (April 2005 - March 2008)
    Funded by BIRD/Japan Science and Technology Agency (JST) (September 2005 - September 2008)
    Funded by BIRD/Japan Science and Technology Agency (JST) (October 2007 - September 2010)
    Funded by Grant-in-Aid for Publication of Scientific Research Results/Japan Society for the Promotion of Science (JSPS) (April 2011 - March 2012)
    Funded by Grant-in-Aid for Publication of Scientific Research Results/Japan Society for the Promotion of Science (JSPS) (April 2012 - March 2013)
    Supported by the commission for the Development of Artificial Gene Synthesis Technology for Creating Innovative Biomaterial from the Ministry of Economy, Trade and Industry (METI) (October 2012 - March 2016)
    Funded by the project commissioned by the New Energy and Industrial Technology Development Organization (NEDO) (April 2016 -)