EzCatDB

R L C P
Hierarchic Classification of Catalytic Mechanisms


R 8.-.-.- : Isomerization (shift of double-bond position) (Reaction)

L 8.11113.-.- : Non-adjacent bond; C=C-C=C-O to C-C=C-C=O (Ligand group involved)

C 8.11113.362040.- : Dodecenoyl-CoA delta-isomerase 2nd reaction step-like mechanism (Acid/Stabilizer); Initially-single-bonded atom stabilized; Acid deprotonation to initially-double-bonded atom (Catalytic mechanism)

P 8.11113.362040.140 : An acidic residue + mainchain amide groups (Residues/cofactors in Protein)


1st Nucleophile : non-existent
Catalytic groups : groups in residue/substrate
General Base : non-existent
General Acid : a catalytic residue

Related Enzymes

There is one entry in this class.
  • S00849 : (reaction 2) 5.3.3.8; 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) (Dodecenoyl-CoA isomerase) (Delta (Catalytic domain; 3.90.226.10)
  • Copyright: Nozomi Nagano, JST & CBRC-AIST
    Funded by PRESTO/Japan Science and Technology Agency (JST) (December 2001 - November 2004)
    Funded by Grant-in-Aid for Publication of Scientific Research Results/Japan Society for the Promotion of Science (JSPS) (April 2005 - March 2006)
    Funded by Grant-in-Aid for Scientific Research (B)/Japan Society for the Promotion of Science (JSPS) (April 2005 - March 2008)
    Funded by BIRD/Japan Science and Technology Agency (JST) (September 2005 - September 2008)
    Funded by BIRD/Japan Science and Technology Agency (JST) (October 2007 - September 2010)
    Funded by Grant-in-Aid for Publication of Scientific Research Results/Japan Society for the Promotion of Science (JSPS) (April 2011 - March 2012)
    Funded by Grant-in-Aid for Publication of Scientific Research Results/Japan Society for the Promotion of Science (JSPS) (April 2012 - March 2013)
    Supported by the commission for the Development of Artificial Gene Synthesis Technology for Creating Innovative Biomaterial from the Ministry of Economy, Trade and Industry (METI) (October 2012 - March 2016)
    Funded by the project commissioned by the New Energy and Industrial Technology Development Organization (NEDO) (April 2016 -)