DB code: D00471

RLCP classification 1.13.200.966 : Hydrolysis
CATH domain 2.40.70.10 : Cathepsin D, subunit A; domain 1 Catalytic domain
2.40.70.10 : Cathepsin D, subunit A; domain 1 Catalytic domain
E.C. 3.4.23.16 2.7.7.49 2.7.7.7 3.1.26.4
CSA 1hiv 1a30
M-CSA 1hiv 1a30
MACiE M0175

CATH domain Related DB codes (homologues)
2.40.70.10 : Cathepsin D, subunit A; domain 1 D00436 D00438 D00439 D00440 D00441 D00442 D00443 D00437 D00444 D00423 D00445 D00484 M00206 M00166 D00231 D00529

Uniprot Enzyme Name
UniprotKB Protein name Synonyms Contains Pfam RefSeq
P03366 Gag-Pol polyprotein
Pr160Gag-Pol
Matrix protein p17
(MA)
Capsid protein p24
(CA)
Spacer peptide p2
Nucleocapsid protein p7
(NC)
Transframe peptide
(TF)
p6-pol
(p6*)
Protease
EC 3.4.23.16
Retropepsin PR
Reverse transcriptase/ribonuclease H
EC 2.7.7.49
EC 2.7.7.7
EC 3.1.26.4
p66 RT
p51 RT
p15
Integrase
(IN)
PF00540 (Gag_p17)
PF00607 (Gag_p24)
PF00552 (IN_DBD_C)
PF02022 (Integrase_Zn)
PF00075 (RNase_H)
PF00665 (rve)
PF00077 (RVP)
PF00078 (RVT_1)
PF06815 (RVT_connect)
PF06817 (RVT_thumb)
PF00098 (zf-CCHC)
[Graphical View]
P04585 Gag-Pol polyprotein
Pr160Gag-Pol
Matrix protein p17
(MA)
Capsid protein p24
(CA)
Spacer peptide p2
Nucleocapsid protein p7
(NC)
Transframe peptide
(TF)
p6-pol
(p6*)
Protease
EC 3.4.23.16
Retropepsin PR
Reverse transcriptase/ribonuclease H
EC 2.7.7.49
EC 2.7.7.7
EC 3.1.26.4
p66 RT
p51 RT
p15
Integrase
(IN)
PF00540 (Gag_p17)
PF00607 (Gag_p24)
PF00552 (IN_DBD_C)
PF02022 (Integrase_Zn)
PF00075 (RNase_H)
PF00665 (rve)
PF00077 (RVP)
PF00078 (RVT_1)
PF06815 (RVT_connect)
PF06817 (RVT_thumb)
PF00098 (zf-CCHC)
[Graphical View]
NP_057849.4 (Protein)
NC_001802.1 (DNA/RNA sequence)
P04587 Gag-Pol polyprotein
Pr160Gag-Pol
Matrix protein p17
(MA)
Capsid protein p24
(CA)
Spacer peptide p2
Nucleocapsid protein p7
(NC)
Transframe peptide
(TF)
p6-pol
(p6*)
Protease
EC 3.4.23.16
Retropepsin PR
Reverse transcriptase/ribonuclease H
EC 2.7.7.49
EC 2.7.7.7
EC 3.1.26.4
p66 RT
p51 RT
p15
Integrase
(IN)
PF00540 (Gag_p17)
PF00607 (Gag_p24)
PF00552 (IN_DBD_C)
PF02022 (Integrase_Zn)
PF00075 (RNase_H)
PF00665 (rve)
PF00077 (RVP)
PF00078 (RVT_1)
PF06815 (RVT_connect)
PF06817 (RVT_thumb)
PF00098 (zf-CCHC)
[Graphical View]
P35963 Gag-Pol polyprotein
Pr160Gag-Pol
Matrix protein p17
(MA)
Capsid protein p24
(CA)
Spacer peptide p2
Nucleocapsid protein p7
(NC)
Transframe peptide
(TF)
p6-pol
(p6*)
Protease
EC 3.4.23.16
Retropepsin PR
Reverse transcriptase/ribonuclease H
EC 2.7.7.49
EC 2.7.7.7
EC 3.1.26.4
p66 RT
p51 RT
p15
Integrase
(IN)
PF00540 (Gag_p17)
PF00607 (Gag_p24)
PF00552 (IN_DBD_C)
PF02022 (Integrase_Zn)
PF00075 (RNase_H)
PF00665 (rve)
PF00077 (RVP)
PF00078 (RVT_1)
PF06815 (RVT_connect)
PF06817 (RVT_thumb)
PF00098 (zf-CCHC)
[Graphical View]

KEGG enzyme name
HIV-1 retropepsin
human immunodeficiency virus type 1 protease
gag protease
HIV aspartyl protease
HIV proteinase
retroproteinase
HIV-1 protease
HIV-2 protease

UniprotKB: Accession Number Entry name Activity Subunit Subcellular location Cofactor
P03366 POL_HV1B1 Specific for a P1 residue that is hydrophobic, and P1'' variable, but often Pro. Endonucleolytic cleavage to 5''- phosphomonoester. Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Pre-integration complex interacts with human HMGA1. Matrix protein p17 is a trimer. Interacts with gp120 and human BAF. Capsid is a homodimer. Interacts with human PPIA/CYPA. The protease is a homodimer, whose active site consists of two apposed aspartic acid residues. The reverse transcriptase is a heterodimer of p66 RT and p51 RT (RT p66/p51). Heterodimerization of RT is essential for DNA polymerase activity. Despite the sequence identities, p66 RT and p51 RT have distinct folding. Integrase is a homodimer and possibly can form homotetramer. Integrase interacts with human SMARCB1/INI1 and human PSIP1/LEDGF isoform 1 (By similarity). Matrix protein p17: Virion (Potential). Nucleus (By similarity). Cytoplasm (By similarity). Cell membrane, Lipid-anchor (Potential). Note=Following virus entry, the nuclear localization signal (NLS) of the matrix protein participates with Vpr to the nuclear localization of the viral genome. During virus production, the nuclear export activity of the matrix protein counteracts the NLS to maintain the Gag and Gag-Pol polyproteins in the cytoplasm, thereby directing unspliced RNA to the plasma membrane (By similarity). Capsid protein p24: Virion (Potential). Nucleocapsid protein p7: Virion (Potential). Reverse transcriptase/ribonuclease H: Virion (Potential). Integrase: Virion (Potential). Nucleus (Potential). Cytoplasm (Potential). Note=Nuclear at initial phase, cytoplasmic at assembly (Potential). Binds 2 magnesium ions for reverse transcriptase polymerase activity (By similarity). Binds 2 magnesium ions for ribonuclease H (RNase H) activity. Substrate-binding is a precondition for magnesium binding (By similarity). Magnesium ions for integrase activity. Binds at least 1, maybe 2 magnesium ions (By similarity).
P04585 POL_HV1H2 Specific for a P1 residue that is hydrophobic, and P1'' variable, but often Pro. Endonucleolytic cleavage to 5''- phosphomonoester. Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Pre-integration complex interacts with human HMGA1. Matrix protein p17 is a trimer. Interacts with gp120 and human BAF. Capsid is a homodimer. Interacts with human PPIA/CYPA. The protease is a homodimer, whose active site consists of two apposed aspartic acid residues. The reverse transcriptase is a heterodimer of p66 RT and p51 RT (RT p66/p51). Heterodimerization of RT is essential for DNA polymerase activity. Despite the sequence identities, p66 RT and p51 RT have distinct folding. Integrase is a homodimer and possibly can form homotetramer. Integrase interacts with human SMARCB1/INI1 and human PSIP1/LEDGF isoform 1. Matrix protein p17: Virion (Potential). Nucleus (By similarity). Cytoplasm (By similarity). Cell membrane, Lipid-anchor (Potential). Note=Following virus entry, the nuclear localization signal (NLS) of the matrix protein participates with Vpr to the nuclear localization of the viral genome. During virus production, the nuclear export activity of the matrix protein counteracts the NLS to maintain the Gag and Gag-Pol polyproteins in the cytoplasm, thereby directing unspliced RNA to the plasma membrane (By similarity). Capsid protein p24: Virion (Potential). Nucleocapsid protein p7: Virion (Potential). Reverse transcriptase/ribonuclease H: Virion (Potential). Integrase: Virion (Potential). Nucleus (Potential). Cytoplasm (Potential). Note=Nuclear at initial phase, cytoplasmic at assembly (Potential). Binds 2 magnesium ions for reverse transcriptase polymerase activity (By similarity). Binds 2 magnesium ions for ribonuclease H (RNase H) activity. Substrate-binding is a precondition for magnesium binding (By similarity). Magnesium ions for integrase activity. Binds at least 1, maybe 2 magnesium ions (By similarity).
P04587 POL_HV1B5 Specific for a P1 residue that is hydrophobic, and P1'' variable, but often Pro. Endonucleolytic cleavage to 5''- phosphomonoester. Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Pre-integration complex interacts with human HMGA1. Matrix protein p17 is a trimer. Interacts with gp120 and human BAF. Capsid is a homodimer. Interacts with human PPIA/CYPA. The protease is a homodimer, whose active site consists of two apposed aspartic acid residues. The reverse transcriptase is a heterodimer of p66 RT and p51 RT (RT p66/p51). Heterodimerization of RT is essential for DNA polymerase activity. Despite the sequence identities, p66 RT and p51 RT have distinct folding. Integrase is a homodimer and possibly can form homotetramer. Integrase interacts with human SMARCB1/INI1 and human PSIP1/LEDGF isoform 1 (By similarity). Matrix protein p17: Virion (Potential). Nucleus (By similarity). Cytoplasm (By similarity). Cell membrane, Lipid-anchor (Potential). Note=Following virus entry, the nuclear localization signal (NLS) of the matrix protein participates with Vpr to the nuclear localization of the viral genome. During virus production, the nuclear export activity of the matrix protein counteracts the NLS to maintain the Gag and Gag-Pol polyproteins in the cytoplasm, thereby directing unspliced RNA to the plasma membrane (By similarity). Capsid protein p24: Virion (Potential). Nucleocapsid protein p7: Virion (Potential). Reverse transcriptase/ribonuclease H: Virion (Potential). Integrase: Virion (Potential). Nucleus (Potential). Cytoplasm (Potential). Note=Nuclear at initial phase, cytoplasmic at assembly (Potential). Binds 2 magnesium ions for reverse transcriptase polymerase activity (By similarity). Binds 2 magnesium ions for ribonuclease H (RNase H) activity. Substrate-binding is a precondition for magnesium binding (By similarity). Magnesium ions for integrase activity. Binds at least 1, maybe 2 magnesium ions (By similarity).
P35963 POL_HV1Y2 Specific for a P1 residue that is hydrophobic, and P1'' variable, but often Pro. Endonucleolytic cleavage to 5''- phosphomonoester. Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Pre-integration complex interacts with human HMGA1. Matrix protein p17 is a trimer. Interacts with gp120 and human BAF. Capsid is a homodimer. Interacts with human PPIA/CYPA. The protease is a homodimer, whose active site consists of two apposed aspartic acid residues. The reverse transcriptase is a heterodimer of p66 RT and p51 RT (RT p66/p51). Heterodimerization of RT is essential for DNA polymerase activity. Despite the sequence identities, p66 RT and p51 RT have distinct folding. Integrase is a homodimer and possibly can form homotetramer. Integrase interacts with human SMARCB1/INI1 and human PSIP1/LEDGF isoform 1 (By similarity). Matrix protein p17: Virion (Potential). Nucleus (By similarity). Cytoplasm (By similarity). Cell membrane, Lipid-anchor (Potential). Note=Following virus entry, the nuclear localization signal (NLS) of the matrix protein participates with Vpr to the nuclear localization of the viral genome. During virus production, the nuclear export activity of the matrix protein counteracts the NLS to maintain the Gag and Gag-Pol polyproteins in the cytoplasm, thereby directing unspliced RNA to the plasma membrane (By similarity). Capsid protein p24: Virion (Potential). Nucleocapsid protein p7: Virion (Potential). Reverse transcriptase/ribonuclease H: Virion (Potential). Integrase: Virion (Potential). Nucleus (Potential). Cytoplasm (Potential). Note=Nuclear at initial phase, cytoplasmic at assembly (Potential). Binds 2 magnesium ions for reverse transcriptase polymerase activity (By similarity). Binds 2 magnesium ions for ribonuclease H (RNase H) activity. Substrate-binding is a precondition for magnesium binding (By similarity). Magnesium ions for integrase activity. Binds at least 1, maybe 2 magnesium ions (By similarity).

KEGG Pathways
Map code Pathways E.C.

Compound table
Substrates Products Intermediates
KEGG-id C00017 C00012 C00001 C00017 C00012 I00136
E.C.
Compound Protein Peptide H2O Protein Peptide Amino-diol-tetrahedral intermediate
Type peptide/protein peptide/protein H2O peptide/protein peptide/protein
ChEBI 15377
PubChem 22247451
962
1a30A Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:GLU-ASP-LEU Unbound Unbound Unbound
1ajvA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:NMB
1ajxA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:AH1
1axaA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:U0E-U0E Unbound Unbound Unbound
1bdlA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Analogue:IM1 Unbound
1bdqA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:IM1 Unbound Unbound Unbound
1bdrA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:IM1 Unbound Unbound Unbound
1bv7A Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:XV6
1bv9A Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:XV6
1bveA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:DMP
1bvgA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:DMP
1bwaA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:XV6
1bwbA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:146
1d4hA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:BEH
1d4iA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:BEG
1d4jA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:MSC
1dmpA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:DMQ
1dw6C Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:ARG-VAL-DCL-PHE-GLU-ALA-NLN Unbound Unbound Unbound
1ebkC Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:ARG-VAL-DCL-PHE-GLU-ALA-NLN Unbound Unbound Unbound
1ebkE Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:ARG-VAL-DCL-PHE-GLU-ALA-NLN Unbound Unbound Unbound
1ebwA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:BEI
1ebyA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:BEB
1ebzA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:BEC
1ec0A Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:BED
1ec1A Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:BEE
1ec2A Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:BEJ
1ec3A Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:MS3
1fejC Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:ACE-THR-ILE-NLE-NLE-GLN-ARG Unbound Unbound Unbound
1ff0C Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:ACE-THR-ILE-NLE-NLE-GLN-ARG Unbound Unbound Unbound
1fffC Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:ARG-VAL-DCL-PHE-GLU-ALA-NLE-NH2 Unbound Unbound Unbound
1ffiC Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:ACE-THR-ILE-NLE-NLE-GLN-ARG Unbound Unbound Unbound
1fg6C Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:ACE-THR-ILE-NLE-NLE-GLN-ARG Unbound Unbound Unbound
1fg8C Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:ARG-VAL-DCL-PHE-GLU-ALA-NLE-NH2 Unbound Unbound Unbound
1fgcC Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:ACE-THR-ILE-NLE-NLE-GLN-ARG Unbound Unbound Unbound
1g2kA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:NM1
1g6lA01 Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1gnnA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:U0E-U0E Unbound Unbound Unbound
1gnoA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:U0E-U0E Unbound Unbound Unbound
1hbvA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:GAN Unbound Unbound Unbound
1hefE Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:ALA-ALA-PHE-OHE-PHE-VAL-VAL-OME Unbound Unbound Unbound
1hegE Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:ALA-ALA-PHE-OHE-GLY-VAL-VAL-OME Unbound Unbound Unbound
1hihA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:C20 Unbound Unbound Unbound
1hivA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:NOA-HIS-CAV-ILE-APY Unbound Unbound Unbound
1hosA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:PHP
1hpsA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:RUN-RUN Unbound Unbound Unbound
1hpvA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:478 Unbound Unbound Unbound
1hteA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Bound:LEU-GLN-GLU-SER Analogue:G23 Unbound
1htfA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Analogue:G26 Unbound Unbound
1htgA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:G37 Unbound Unbound Unbound
1hvhA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:Q82
1hviA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:A77
1hvjA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:A78 Unbound Unbound Unbound
1hvkA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:A79
1hvlA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1hvrA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:A76
1hvsA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:XK2
1hwrA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:A77
1hxbA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:QNC-ASN-HPH-DIQ-NTB Unbound Unbound Transition-state-analogue:216
1k1tA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:ARG-VAL-DCL-PHE-GLU-ALA-NLE Unbound Unbound Unbound
1k1uA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:ARG-VAL-DCL-PHE-GLU-ALA-NLE Unbound Unbound Unbound
1k2bA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:ARG-VAL-DCL-PHE-GLU-ALA-NLE-NH2 Unbound Unbound Unbound
1k2cA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:ARG-VAL-DCL-PHE-GLU-ALA-NLE-NH2 Unbound Unbound Unbound
1k6cA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:MK1 Unbound Unbound Unbound
1k6pA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:XN3 Unbound Unbound Unbound
1k6tA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:XN1 Unbound Unbound Unbound
1k6vA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:XN2 Unbound Unbound Unbound
1lv1A01 Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1merA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1mesA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:DMQ
1metA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:DMP
1meuA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:DMP
1odwA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:BOC-HPH-DMN-HPH-BOC Unbound Unbound Transition-state-analogue:DMP
1odxA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:BOC-HPH-DMN-HPH-BOC Unbound Unbound Unbound
1odyA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:LP1 Unbound Unbound Unbound
1qbrA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1qbsA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:XV6
1qbtA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:DMP
1qbuA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Transition-state-analogue:146
1sbgA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:IM1 Unbound Unbound Transition-state-analogue:846
1tcxA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:IM1 Unbound Unbound Unbound
2bpvA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:1IN Unbound Unbound Unbound
2bpwA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:1IN Unbound Unbound Unbound
2bpxA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:MK1 Unbound Unbound Unbound
2bpyA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:3IN Unbound Unbound Unbound
2bpzA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:3IN Unbound Unbound Unbound
3phvA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
3tlhA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:INT Unbound Unbound Unbound
9hvpA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Analogue:PHQ-VAL-COR-VAL-PHQ Unbound Unbound Unbound
1a30B Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1ajvB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1ajxB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1axaB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1bdlB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Analogue:IM1 Unbound
1bdqB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1bdrB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1bv7B Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1bv9B Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1bveB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1bvgB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1bwaB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1bwbB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1d4hB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1d4iB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1d4jB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1dmpB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1dw6D Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1ebkD Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1ebkF Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1ebwB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1ebyB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1ebzB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1ec0B Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1ec1B Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1ec2B Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1ec3B Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1fejD Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1ff0D Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1fffD Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1ffiD Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1fg6D Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1fg8D Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1fgcD Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1g2kB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1g6lA02 Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1gnnB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1gnoB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1hbvB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1hihB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1hivB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1hosB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1hpsB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1hpvB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1hteB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1htfB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1htgB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1hvhB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1hviB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1hvjB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1hvkB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1hvlB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1hvrB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1hvsB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1hwrB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1hxbB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1k1tB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1k1uB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1k2bB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1k2cB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1k6cB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1k6pB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1k6tB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1k6vB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1lv1A02 Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1merB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1mesB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1metB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1meuB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1odwB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1odxB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1odyB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1qbrB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1qbsB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1qbtB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1qbuB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1sbgB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
1tcxB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
2bpvB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
2bpwB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
2bpxB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
2bpyB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
2bpzB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound
9hvpB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain Unbound Unbound Unbound Unbound Unbound

Reference for Active-site residues
resource references E.C.
Swiss-prot;P35963

Active-site residues
PDB Catalytic residues Cofactor-binding residues Modified residues Main-chain involved in catalysis Comment
1a30A Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1ajvA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1ajxA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1axaA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant A28S
1bdlA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant T31S, V32I, L33V, E34A, E35G, M36I, S37E
1bdqA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant T31S, V32I, L33V, E34A, E35G, M36I, S37E, I47V, V82I
1bdrA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant T31S, L33V, E34T, E35G, M36I, S37E
1bv7A Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1bv9A Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant I84V
1bveA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant C95A
1bvgA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant C95A
1bwaA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant V82F, I84V
1bwbA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant V82F, I84V
1d4hA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1d4iA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1d4jA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1dmpA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1dw6C Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant Q7K, L33I, L63I, C67A, L90M, C95A
1ebkC Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant Q7K, R8Q, L33I, L63I, C67A, C95A
1ebkE Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant Q7K, R8Q, L33I, L63I, C67A, C95A
1ebwA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1ebyA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1ebzA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1ec0A Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1ec1A Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1ec2A Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1ec3A Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1fejC Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant L90M
1ff0C Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant K45I
1fffC Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant D30N
1ffiC Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant D30N
1fg6C Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant N88D
1fg8C Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant N88D
1fgcC Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1g2kA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1g6lA01 Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1gnnA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant V82N
1gnoA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hbvA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hefE Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hegE Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hihA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hivA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hosA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hpsA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hpvA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hteA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1htfA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1htgA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hvhA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hviA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hvjA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hvkA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hvlA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hvrA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hvsA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant V82A
1hwrA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hxbA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1k1tA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant K45I, V82S
1k1uA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant K45I, L90M
1k2bA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant N88D, L90M
1k2cA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant D30N, V82S
1k6cA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant Q7K, K14R, V82T, I84V
1k6pA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant Q7K, K14R, V82T, I84V
1k6tA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant Q7K, K14R, V82T, I84V
1k6vA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant Q7K, K14R, V82T, I84V
1lv1A01 Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant C95M
1merA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant I84V
1mesA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant I84V
1metA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant V82F
1meuA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant V82F, I84V
1odwA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1odxA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant A71T, V82A
1odyA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1qbrA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1qbsA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1qbtA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1qbuA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1sbgA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1tcxA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant I32V, V47I, I82V
2bpvA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
2bpwA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
2bpxA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
2bpyA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
2bpzA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
3phvA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
3tlhA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
9hvpA Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1a30B Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1ajvB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1ajxB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1axaB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant A28S
1bdlB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant T31S, V32I, L33V, E34A, E35G, M36I, S37E
1bdqB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant T31S, V32I, L33V, E34A, E35G, M36I, S37E, I47V, V82I
1bdrB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant T31S, L33V, E34T, E35G, M36I, S37E
1bv7B Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1bv9B Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant I84V
1bveB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant C95A
1bvgB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant C95A
1bwaB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant V82F, I84V
1bwbB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant V82F, I84V
1d4hB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 125
1d4iB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 125
1d4jB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 125
1dmpB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1dw6D Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 125 mutant Q107K, L133I, L163I, C167A, L190M, C195A
1ebkD Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 125 mutant Q107K, R108Q, L133I, L163I, C167A, C195A
1ebkF Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 125 mutant Q107K, R108Q, L133I, L163I, C167A, C195A
1ebwB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 125
1ebyB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 125
1ebzB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 125
1ec0B Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 125
1ec1B Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 125
1ec2B Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 125
1ec3B Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 125
1fejD Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 125 mutant L190M
1ff0D Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 125 mutant K145I
1fffD Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 125 mutant D130N
1ffiD Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 125 mutant D130N
1fg6D Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 125 mutant N188D
1fg8D Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 125 mutant N188D
1fgcD Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 125
1g2kB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1g6lA02 Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 1025
1gnnB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant V82N
1gnoB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hbvB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hihB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hivB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hosB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hpsB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hpvB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hteB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1htfB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1htgB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hvhB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hviB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hvjB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hvkB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hvlB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hvrB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hvsB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant V82A
1hwrB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1hxbB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1k1tB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 125 mutant K145I, V182S
1k1uB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 125 mutant K145I, L190M
1k2bB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant N88D, L90M
1k2cB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant D30N, V82S
1k6cB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant Q7K, K14R, V82T, I84V
1k6pB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant Q7K, K14R, V82T, I84V
1k6tB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant Q7K, K14R, V82T, I84V
1k6vB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant Q7K,K14R,V82T,I84V
1lv1A02 Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 1025 mutant C1095A
1merB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant I84V
1mesB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant I84V
1metB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant V82F
1meuB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant V82F, I84V
1odwB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1odxB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant A71T, V82A
1odyB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1qbrB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1qbsB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1qbtB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1qbuB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1sbgB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
1tcxB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25 mutant I32V, V47I, I82V
2bpvB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
2bpwB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
2bpxB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
2bpyB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
2bpzB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25
9hvpB Pdbj logo s Rasmollogo id Rasmollogo chain Mmcif id Mmcif chain ASP 25

References for Catalytic Mechanism
References Sections No. of steps in catalysis
[1]
p.302
[7]
Fig.4, p.8461-8462
[8]
p.1607-1608
[9]
Fig.5, p.24363-24365
[14]
p.7978-7979
[33]
Fig.7, p.12942-12943
[39]
Fig.17, p.336-339
[40]
p.949
[42]
p.682
[79]
Fig.8, p.803
[81]
Fig.1
[100]
Fig.2

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Medline ID
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Medline ID
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Related UniProtKB
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Medline ID
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Related UniProtKB
[8]
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Medline ID
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Related UniProtKB
[9]
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Medline ID
PubMed ID 1761538
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Related UniProtKB
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Medline ID
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Related UniProtKB
[11]
Resource
Comments X-ray crystallography
Medline ID
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Related PDB 1heg
Related UniProtKB
[12]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID 1304383
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Year 1992
Volume 1
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Related PDB 1hiv
Related UniProtKB
[13]
Resource
Comments
Medline ID
PubMed ID 8352596
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Year 1993
Volume 62
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Related PDB
Related UniProtKB
[14]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID 8347601
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Related PDB 1hos
Related UniProtKB
[15]
Resource
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Medline ID
PubMed ID 7918383
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Related PDB 1sbg
Related UniProtKB
[16]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID 8031777
Journal Biochemistry
Year 1994
Volume 33
Pages 8417-27
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Title X-ray crystallographic studies of a series of penicillin-derived asymmetric inhibitors of HIV-1 protease.
Related PDB 1hte 1htf 1htg
Related UniProtKB
[17]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID
Journal J Am Chem Soc
Year 1994
Volume 116
Pages 847-55
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Title Influence of stereochemistry on activity and binding modes for C2 symmetry-based diol inhibitors of HIV-1 protease.
Related PDB 1hvi 1hvj 1hvk 1hvl
Related UniProtKB
[18]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID 7932533
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Year 1994
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Pages 3100-7
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Related PDB 1hps
Related UniProtKB
[19]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID 8278812
Journal Science
Year 1994
Volume 263
Pages 380-4
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Related PDB 1hvr
Related UniProtKB
[20]
Resource
Comments
Medline ID
PubMed ID 8540354
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Year 1995
Volume 362
Pages 439-44
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Related PDB
Related UniProtKB
[21]
Resource
Comments
Medline ID
PubMed ID 8540357
Journal Adv Exp Med Biol
Year 1995
Volume 362
Pages 455-60
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Title Activated dynamics of flap opening in HIV-1 protease.
Related PDB
Related UniProtKB
[22]
Resource
Comments
Medline ID
PubMed ID 8540356
Journal Adv Exp Med Biol
Year 1995
Volume 362
Pages 451-4
Authors Silva AM, Cachau RE, Baldwin ET, Gulnik S, Sham HL, Erickson JW
Title Molecular dynamics of HIV-1 protease in complex with a difluoroketone-containing inhibitor: implications for the catalytic mechanism.
Related PDB
Related UniProtKB
[23]
Resource
Comments
Medline ID
PubMed ID 9383433
Journal Chem Biol
Year 1995
Volume 2
Pages 317-24
Authors Gehlhaar DK, Verkhivker GM, Rejto PA, Sherman CJ, Fogel DB, Fogel LJ, Freer ST
Title Molecular recognition of the inhibitor AG-1343 by HIV-1 protease: conformationally flexible docking by evolutionary programming.
Related PDB
Related UniProtKB
[24]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID
Journal J Am Chem Soc
Year 1995
Volume 117
Pages 1181-2
Authors Kim E.E, Baker CT, Dwyer MD, Murcko MA, Rao BG, Tung RD, Navia MA
Title Crystal structure of HIV-1 protease in complex with VX-478, a potent and orally bioavailable inhibitor of the enzyme.
Related PDB 1hpv
Related UniProtKB
[25]
Resource
Comments
Medline ID
PubMed ID 7665551
Journal J Biol Chem
Year 1995
Volume 270
Pages 21433-6
Authors Chen Z, Li Y, Schock HB, Hall D, Chen E, Kuo LC
Title Three-dimensional structure of a mutant HIV-1 protease displaying cross-resistance to all protease inhibitors in clinical trials.
Related PDB
Related UniProtKB
[26]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID 7650677
Journal J Med Chem
Year 1995
Volume 38
Pages 3246-52
Authors Hoog SS, Zhao B, Winborne E, Fisher S, Green DW, DesJarlais RL, Newlander KA, Callahan JF, Moore ML, Huffman WF, et al
Title A check on rational drug design: crystal structure of a complex of human immunodeficiency virus type 1 protease with a novel gamma-turn mimetic inhibitor.
Related PDB 1hef
Related UniProtKB
[27]
Resource
Comments
Medline ID
PubMed ID 7796263
Journal Nat Struct Biol
Year 1995
Volume 2
Pages 274-80
Authors Nicholson LK, Yamazaki T, Torchia DA, Grzesiek S, Bax A, Stahl SJ, Kaufman JD, Wingfield PT, Lam PY, Jadhav PK, et al
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Related PDB
Related UniProtKB
[28]
Resource
Comments
Medline ID
PubMed ID 8590019
Journal Structure
Year 1995
Volume 3
Pages 581-90
Authors Baldwin ET, Bhat TN, Gulnik S, Liu B, Topol IA, Kiso Y, Mimoto T, Mitsuya H, Erickson JW
Title Structure of HIV-1 protease with KNI-272, a tight-binding transition-state analog containing allophenylnorstatine.
Related PDB
Related UniProtKB
[29]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID 7613867
Journal Structure
Year 1995
Volume 3
Pages 381-9
Authors Priestle JP, Fassler A, Rosel J, Tintelnot-Blomley M, Strop P, Grutter MG
Title Comparative analysis of the X-ray structures of HIV-1 and HIV-2 proteases in complex with CGP 53820, a novel pseudosymmetric inhibitor.
Related PDB 1hih
Related UniProtKB
[30]
Resource
Comments
Medline ID
PubMed ID 8652592
Journal Biochemistry
Year 1996
Volume 35
Pages 2482-8
Authors Davis DA, Dorsey K, Wingfield PT, Stahl SJ, Kaufman J, Fales HM, Levine RL
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Related PDB
Related UniProtKB
[31]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID 8718851
Journal Biochemistry
Year 1996
Volume 35
Pages 10627-33
Authors Hong L, Treharne A, Hartsuck JA, Foundling S, Tang J
Title Crystal structures of complexes of a peptidic inhibitor with wild-type and two mutant HIV-1 proteases.
Related PDB 1gnn 1gno
Related UniProtKB
[32]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID 8756683
Journal Biochemistry
Year 1996
Volume 35
Pages 10279-86
Authors Hoog SS, Towler EM, Zhao B, Doyle ML, Debouck C, Abdel-Meguid SS
Title Human immunodeficiency virus protease ligand specificity conferred by residues outside of the active site cavity.
Related PDB 1tcx
Related UniProtKB
[33]
Resource
Comments
Medline ID
PubMed ID 8841139
Journal Biochemistry
Year 1996
Volume 35
Pages 12933-44
Authors Rose RB, Craik CS, Douglas NL, Stroud RM
Title Three-dimensional structures of HIV-1 and SIV protease product complexes.
Related PDB
Related UniProtKB
[34]
Resource
Comments
Medline ID
PubMed ID 8756455
Journal Biochemistry
Year 1996
Volume 35
Pages 9945-50
Authors Wang YX, Freedberg DI, Yamazaki T, Wingfield PT, Stahl SJ, Kaufman JD, Kiso Y, Torchia DA
Title Solution NMR evidence that the HIV-1 protease catalytic aspartyl groups have different ionization states in the complex formed with the asymmetric drug KNI-272.
Related PDB
Related UniProtKB
[35]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID 8807858
Journal Chem Biol
Year 1996
Volume 3
Pages 301-14
Authors Hodge CN, Aldrich PE, Bacheler LT, Chang CH, Eyermann CJ, Garber S, Grubb M, Jackson DA, Jadhav PK, Korant B, Lam PY, Maurin MB, Meek JL, Otto MJ, Rayner MM, Reid C, Sharpe TR, Shum L, Winslow DL, Erickson-Viitanen S
Title Improved cyclic urea inhibitors of the HIV-1 protease: synthesis, potency, resistance profile, human pharmacokinetics and X-ray crystal structure of DMP 450.
Related PDB 1dmp
Related UniProtKB
[36]
Resource
Comments
Medline ID
PubMed ID 8621402
Journal J Biol Chem
Year 1996
Volume 271
Pages 5458-63
Authors Szeltner Z, Polgar L
Title Conformational stability and catalytic activity of HIV-1 protease are both enhanced at high salt concentration.
Related PDB
Related UniProtKB
[37]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID 8784449
Journal J Med Chem
Year 1996
Volume 39
Pages 3514-25
Authors Lam PY, Ru Y, Jadhav PK, Aldrich PE, DeLucca GV, Eyermann CJ, Chang CH, Emmett G, Holler ER, Daneker WF, Li L, Confalone PN, McHugh RJ, Han Q, Li R, Markwalder JA, Seitz SP, Sharpe TR, Bacheler LT, Rayner MM, Klabe RM, Shum L, Winslow DL, Kornhauser DM, Hodge CN, et al
Title Cyclic HIV protease inhibitors: synthesis, conformational analysis, P2/P2' structure-activity relationship, and molecular recognition of cyclic ureas.
Related PDB 1qbs
Related UniProtKB
[38]
Resource
Comments
Medline ID
PubMed ID 8667359
Journal J Med Chem
Year 1996
Volume 39
Pages 2156-69
Authors Nugiel DA, Jacobs K, Kaltenbach RF, Worley T, Patel M, Meyer DT, Jadhav PK, De Lucca GV, Smyser TE, Klabe RM, Bacheler LT, Rayner MM, Seitz SP
Title Preparation and structure-activity relationship of novel P1/P1'-substituted cyclic urea-based human immunodeficiency virus type-1 protease inhibitors.
Related PDB
Related UniProtKB
[39]
Resource
Comments
Medline ID
PubMed ID 8551523
Journal J Mol Biol
Year 1996
Volume 255
Pages 321-46
Authors Silva AM, Cachau RE, Sham HL, Erickson JW
Title Inhibition and catalytic mechanism of HIV-1 aspartic protease.
Related PDB
Related UniProtKB
[40]
Resource
Comments
Medline ID
PubMed ID 8901873
Journal Nat Struct Biol
Year 1996
Volume 3
Pages 946-50
Authors Smith R, Brereton IM, Chai RY, Kent SB
Title Ionization states of the catalytic residues in HIV-1 protease.
Related PDB
Related UniProtKB
[41]
Resource
Comments
Medline ID
PubMed ID 9390264
Journal Pac Symp Biocomput
Year 1996
Volume
Pages 638-52
Authors Verkhivker GM
Title Empirical free energy calculations of human immunodeficiency virus type 1 protease crystallographic complexes. II. Knowledge-based ligand-protein interaction potentials applied to thermodynamic analysis of hydrophobic mutations.
Related PDB
Related UniProtKB
[42]
Resource
Comments
Medline ID
PubMed ID 8875645
Journal Protein Eng
Year 1996
Volume 9
Pages 679-90
Authors Weber IT, Harrison RW
Title Molecular mechanics calculations on HIV-1 protease with peptide substrates correlate with experimental data.
Related PDB
Related UniProtKB
[43]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID
Journal Protein Pept Lett
Year 1996
Volume 3
Pages 399-406
Authors Kervinen J, Thanki N, Zdanov A, Tino J, Barrish J, Pin FL, Colonno R, Riccardi K, Samanta H, Wlodawer A
Title Structural Analysis of the Native and Drug-Resistant HIV-1 Proteinases Complexed with an Aminodiol Inhibitor.
Related PDB 1odx
Related UniProtKB
[44]
Resource
Comments STRUCTURE BY NMR OF 57-155.
Medline ID 97022126
PubMed ID 8868486
Journal Protein Sci
Year 1996
Volume 5
Pages 495-506
Authors Yamazaki T, Hinck AP, Wang YX, Nicholson LK, Torchia DA, Wingfield P, Stahl SJ, Kaufman JD, Chang CH, Domaille PJ, Lam PY
Title Three-dimensional solution structure of the HIV-1 protease complexed with DMP323, a novel cyclic urea-type inhibitor, determined by nuclear magnetic resonance spectroscopy.
Related PDB 1bve 1bvg
Related UniProtKB P04585
[45]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID 9048541
Journal Biochemistry
Year 1997
Volume 36
Pages 1573-80
Authors Ala PJ, Huston EE, Klabe RM, McCabe DD, Duke JL, Rizzo CJ, Korant BD, DeLoskey RJ, Lam PY, Hodge CN, Chang CH
Title Molecular basis of HIV-1 protease drug resistance: structural analysis of mutant proteases complexed with cyclic urea inhibitors.
Related PDB 1mer 1mes 1met 1meu
Related UniProtKB
[46]
Resource
Comments
Medline ID
PubMed ID 9346283
Journal Eur J Biochem
Year 1997
Volume 248
Pages 313-22
Authors Lange-Savage G, Berchtold H, Liesum A, Budt KH, Peyman A, Knolle J, Sedlacek J, Fabry M, Hilgenfeld R
Title Structure of HOE/BAY 793 complexed to human immunodeficiency virus (HIV-1) protease in two different crystal forms--structure/function relationship and influence of crystal packing.
Related PDB
Related UniProtKB
[47]
Resource
Comments
Medline ID
PubMed ID 9188447
Journal J Biol Chem
Year 1997
Volume 272
Pages 15603-6
Authors Vance JE, LeBlanc DA, Wingfield P, London RE
Title Conformational selectivity of HIV-1 protease cleavage of X-Pro peptide bonds and its implications.
Related PDB
Related UniProtKB
[48]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID 9083478
Journal J Med Chem
Year 1997
Volume 40
Pages 898-902
Authors Backbro K, Lowgren S, Osterlund K, Atepo J, Unge T, Hulten J, Bonham NM, Schaal W, Karlen A, Hallberg A
Title Unexpected binding mode of a cyclic sulfamide HIV-1 protease inhibitor.
Related PDB 1ajv 1ajx
Related UniProtKB
[49]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID 9003516
Journal J Med Chem
Year 1997
Volume 40
Pages 181-91
Authors Jadhav PK, Ala P, Woerner FJ, Chang CH, Garber SS, Anton ED, Bacheler LT
Title Cyclic urea amides: HIV-1 protease inhibitors with low nanomolar potency against both wild type and protease inhibitor resistant mutants of HIV.
Related PDB 1qbr 1qbt 1qbu
Related UniProtKB
[50]
Resource
Comments
Medline ID
PubMed ID 9258349
Journal J Med Chem
Year 1997
Volume 40
Pages 2440-4
Authors Smith AB 3rd, Hirschmann R, Pasternak A, Yao W, Sprengeler PA, Holloway MK, Kuo LC, Chen Z, Darke PL, Schleif WA
Title An orally bioavailable pyrrolinone inhibitor of HIV-1 protease: computational analysis and X-ray crystal structure of the enzyme complex.
Related PDB
Related UniProtKB
[51]
Resource
Comments
Medline ID
PubMed ID 9061782
Journal Proteins
Year 1997
Volume 27
Pages 184-94
Authors Miller M, Geller M, Gribskov M, Kent SB
Title Analysis of the structure of chemically synthesized HIV-1 protease complexed with a hexapeptide inhibitor. Part I: Crystallographic refinement of 2 A data.
Related PDB
Related UniProtKB
[52]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID 9757136
Journal Acta Crystallogr D Biol Crystallogr
Year 1998
Volume 54
Pages 1053-60
Authors Munshi S, Chen Z, Li Y, Olsen DB, Fraley ME, Hungate RW, Kuo LC
Title Rapid X-ray diffraction analysis of HIV-1 protease-inhibitor complexes: inhibitor exchange in single crystals of the bound enzyme.
Related PDB 2bpv 2bpw 2bpx 2bpy 2bpz
Related UniProtKB
[53]
Resource
Comments
Medline ID
PubMed ID 9561200
Journal Adv Exp Med Biol
Year 1998
Volume 436
Pages 59-63
Authors Hong L, Zhang C, Hartsuck JA, Foundling S, Tang J
Title X-ray crystallographic studies of the structure-function relationships of HIV-1 protease.
Related PDB
Related UniProtKB
[54]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID 9790666
Journal Biochemistry
Year 1998
Volume 37
Pages 15042-9
Authors Ala PJ, Huston EE, Klabe RM, Jadhav PK, Lam PY, Chang CH
Title Counteracting HIV-1 protease drug resistance: structural analysis of mutant proteases complexed with XV638 and SD146, cyclic urea amides with broad specificities.
Related PDB 1bv7 1bv9 1bwa 1bwb
Related UniProtKB
[55]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID 9485357
Journal Biochemistry
Year 1998
Volume 37
Pages 2105-10
Authors Louis JM, Dyda F, Nashed NT, Kimmel AR, Davies DR
Title Hydrophilic peptides derived from the transframe region of Gag-Pol inhibit the HIV-1 protease.
Related PDB 1a30
Related UniProtKB
[56]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID 9692985
Journal Biochemistry
Year 1998
Volume 37
Pages 10928-36
Authors Swairjo MA, Towler EM, Debouck C, Abdel-Meguid SS
Title Structural role of the 30's loop in determining the ligand specificity of the human immunodeficiency virus protease.
Related PDB 1bdr
Related UniProtKB
[57]
Resource
Comments
Medline ID
PubMed ID 9860826
Journal Biochemistry
Year 1998
Volume 37
Pages 17137-44
Authors Towler EM, Gulnik SV, Bhat TN, Xie D, Gustschina E, Sumpter TR, Robertson N, Jones C, Sauter M, Mueller-Lantzsch N, Debouck C, Erickson JW
Title Functional characterization of the protease of human endogenous retrovirus, K10: can it complement HIV-1 protease?
Related PDB
Related UniProtKB
[58]
Resource
Comments
Medline ID
PubMed ID 9881109
Journal Bioorg Med Chem
Year 1998
Volume 6
Pages 2185-92
Authors Gupta SP, Babu MS, Sowmya S
Title A quantitative structure-activity relationship study on some sulfolanes and arylthiomethanes acting as HIV-1 protease inhibitors.
Related PDB
Related UniProtKB
[59]
Resource
Comments
Medline ID
PubMed ID 9789740
Journal Gen Physiol Biophys
Year 1998
Volume 17 Suppl 1
Pages 3-6
Authors Lescar J, Stouracova R, Riottot MM, Chitarra V, Brynda J, Fabry M, Horejsi M, Sedlacek J, Bentley GA
Title Structural studies of HIV-1 protease-inhibiting antibodies.
Related PDB
Related UniProtKB
[60]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID 9575185
Journal J Biol Chem
Year 1998
Volume 273
Pages 12325-31
Authors Ala PJ, DeLoskey RJ, Huston EE, Jadhav PK, Lam PY, Eyermann CJ, Hodge CN, Schadt MC, Lewandowski FA, Weber PC, McCabe DD, Duke JL, Chang CH
Title Molecular recognition of cyclic urea HIV-1 protease inhibitors.
Related PDB 1hwr
Related UniProtKB
[61]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID 9554878
Journal J Med Chem
Year 1998
Volume 41
Pages 1446-55
Authors Jadhav PK, Woerner FJ, Lam PY, Hodge CN, Eyermann CJ, Man HW, Daneker WF, Bacheler LT, Rayner MM, Meek JL, Erickson-Viitanen S, Jackson DA, Calabrese JC, Schadt M, Chang CH
Title Nonpeptide cyclic cyanoguanidines as HIV-1 protease inhibitors: synthesis, structure-activity relationships, and X-ray crystal structure studies.
Related PDB 1hvh
Related UniProtKB
[62]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID 9521105
Journal Protein Sci
Year 1998
Volume 7
Pages 300-5
Authors Hong L, Hartsuck JA, Foundling S, Ermolieff J, Tang J
Title Active-site mobility in human immunodeficiency virus, type 1, protease as demonstrated by crystal structure of A28S mutant.
Related PDB 1axa
Related UniProtKB
[63]
Resource
Comments X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS) OF 57-155.
Medline ID 99043699
PubMed ID 9827997
Journal Protein Sci
Year 1998
Volume 7
Pages 2314-23
Authors Kervinen J, Lubkowski J, Zdanov A, Bhatt D, Dunn BM, Hui KY, Powell DJ, Kay J, Wlodawer A, Gustchina A
Title Toward a universal inhibitor of retroviral proteases: comparative analysis of the interactions of LP-130 complexed with proteases from HIV-1, FIV, and EIAV.
Related PDB 1ody
Related UniProtKB P04585
[64]
Resource
Comments
Medline ID
PubMed ID 9672038
Journal Proteins
Year 1998
Volume 32
Pages 7-16
Authors Rick SW, Erickson JW, Burt SK
Title Reaction path and free energy calculations of the transition between alternate conformations of HIV-1 protease.
Related PDB
Related UniProtKB
[65]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID 10429209
Journal Eur J Biochem
Year 1999
Volume 263
Pages 238-45
Authors Mahalingam B, Louis JM, Reed CC, Adomat JM, Krouse J, Wang YF, Harrison RW, Weber IT
Title Structural and kinetic analysis of drug resistant mutants of HIV-1 protease.
Related PDB 1dw6 1ebk
Related UniProtKB
[66]
Resource
Comments
Medline ID
PubMed ID 10438521
Journal J Biol Chem
Year 1999
Volume 274
Pages 23437-42
Authors Louis JM, Wondrak EM, Kimmel AR, Wingfield PT, Nashed NT
Title Proteolytic processing of HIV-1 protease precursor, kinetics and mechanism.
Related PDB
Related UniProtKB
[67]
Resource
Comments
Medline ID
PubMed ID 11000004
Journal J Med Chem
Year 2000
Volume 43
Pages 3495-504
Authors Tyndall JD, Reid RC, Tyssen DP, Jardine DK, Todd B, Passmore M, March DR, Pattenden LK, Bergman DA, Alewood D, Hu SH, Alewood PF, Birch CJ, Martin JL, Fairlie DP
Title Synthesis, stability, antiviral activity, and protease-bound structures of substrate-mimicking constrained macrocyclic inhibitors of HIV-1 protease.
Related PDB
Related UniProtKB
[68]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID 10651036
Journal Proteins
Year 2000
Volume 38
Pages 29-40
Authors Li M, Morris GM, Lee T, Laco GS, Wong CH, Olson AJ, Elder JH, Wlodawer A, Gustchina A
Title Structural studies of FIV and HIV-1 proteases complexed with an efficient inhibitor of FIV protease.
Related PDB 3tlh
Related UniProtKB
[69]
Resource
Comments
Medline ID
PubMed ID 10858137
Journal Science
Year 2000
Volume 288
Pages 1590
Authors Kent S, Marshall GR, Wlodawer A
Title Determining the 3D structure of HIV-1 protease.
Related PDB
Related UniProtKB
[70]
Resource
Comments
Medline ID
PubMed ID 11741592
Journal FEBS Lett
Year 2001
Volume 509
Pages 218-24
Authors Bhavesh NS, Panchal SC, Mittal R, Hosur RV
Title NMR identification of local structural preferences in HIV-1 protease tethered heterodimer in 6 M guanidine hydrochloride.
Related PDB
Related UniProtKB
[71]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID 11170625
Journal J Med Chem
Year 2001
Volume 44
Pages 155-69
Authors Schaal W, Karlsson A, Ahlsen G, Lindberg J, Andersson HO, Danielson UH, Classon B, Unge T, Samuelsson B, Hulten J, Hallberg A, Karlen A
Title Synthesis and comparative molecular field analysis (CoMFA) of symmetric and nonsymmetric cyclic sulfamide HIV-1 protease inhibitors.
Related PDB 1g2k
Related UniProtKB
[72]
Resource
Comments
Medline ID
PubMed ID 11410934
Journal Med Res Rev
Year 2001
Volume 21
Pages 348-53
Authors Mager PP
Title The active site of HIV-1 protease.
Related PDB
Related UniProtKB
[73]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID 11340661
Journal Proteins
Year 2001
Volume 43
Pages 455-64
Authors Mahalingam B, Louis JM, Hung J, Harrison RW, Weber IT
Title Structural implications of drug-resistant mutants of HIV-1 protease: high-resolution crystal structures of the mutant protease/substrate analogue complexes.
Related PDB 1fej 1ff0 1fff 1ffi 1fg6 1fg8 1fgc
Related UniProtKB
[74]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID 11170214
Journal Proteins
Year 2001
Volume 43
Pages 57-64
Authors Pillai B, Kannan KK, Hosur MV
Title 1.9 A x-ray study shows closed flap conformation in crystals of tethered HIV-1 PR.
Related PDB 1g6l
Related UniProtKB
[75]
Resource
Comments
Medline ID
PubMed ID 11591344
Journal Structure
Year 2001
Volume 9
Pages 887-95
Authors Rezacova P, Lescar J, Brynda J, Fabry M, Horejsi M, Sedlacek J, Bentley GA
Title Structural basis of HIV-1 and HIV-2 protease inhibition by a monoclonal antibody.
Related PDB
Related UniProtKB
[76]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID 12051725
Journal Biochem Biophys Res Commun
Year 2002
Volume 294
Pages 395-401
Authors Kumar M, Kannan KK, Hosur MV, Bhavesh NS, Chatterjee A, Mittal R, Hosur RV
Title Effects of remote mutation on the autolysis of HIV-1 PR: X-ray and NMR investigations.
Related PDB 1lv1
Related UniProtKB
[77]
Resource
Comments
Medline ID
PubMed ID 12034371
Journal Biochem Pharmacol
Year 2002
Volume 63
Pages 1863-73
Authors Lebon F, Boggetto N, Ledecq M, Durant F, Benatallah Z, Sicsic S, Lapouyade R, Kahn O, Mouithys-Mickalad A, Deby-Dupont G, Reboud-Ravaux M. Metal-organic compounds: a new approach for drug discovery
Title N1-(4-methyl-2-pyridyl)-2,3,6-trimethoxybenzamide copper(II) complex as an inhibitor of human immunodeficiency virus 1 protease.
Related PDB
Related UniProtKB
[78]
Resource
Comments
Medline ID
PubMed ID 11802730
Journal Biochemistry
Year 2002
Volume 41
Pages 1302-7
Authors Porter DJ, Hanlon MH, Furfine ES
Title HIV-1 protease: characterization of a catalytically competent enzyme-substrate intermediate.
Related PDB
Related UniProtKB
[79]
Resource
Comments
Medline ID
PubMed ID 12124265
Journal Biophys J
Year 2002
Volume 83
Pages 794-807
Authors Trylska J, Bala P, Geller M, Grochowski P
Title Molecular dynamics simulations of the first steps of the reaction catalyzed by HIV-1 protease.
Related PDB
Related UniProtKB
[80]
Resource
Comments
Medline ID
PubMed ID 11906284
Journal J Med Chem
Year 2002
Volume 45
Pages 1432-8
Authors Dohnalek J, Hasek J, Duskova J, Petrokova H, Hradilek M, Soucek M, Konvalinka J, Brynda J, Sedlacek J, Fabry M
Title Hydroxyethylamine isostere of an HIV-1 protease inhibitor prefers its amine to the hydroxy group in binding to catalytic aspartates. A synchrotron study of HIV-1 protease in complex with a peptidomimetic inhibitor.
Related PDB
Related UniProtKB
[81]
Resource
Comments
Medline ID
PubMed ID 12051929
Journal J Mol Biol
Year 2002
Volume 319
Pages 567-83
Authors Piana S, Carloni P, Parrinello M
Title Role of conformational fluctuations in the enzymatic reaction of HIV-1 protease.
Related PDB
Related UniProtKB
[82]
Resource
Comments
Medline ID
PubMed ID 11771964
Journal J Mol Biol
Year 2002
Volume 315
Pages 21-52
Authors Zoete V, Michielin O, Karplus M
Title Relation between sequence and structure of HIV-1 protease inhibitor complexes: a model system for the analysis of protein flexibility.
Related PDB
Related UniProtKB
[83]
Resource
Comments
Medline ID
PubMed ID 11773409
Journal J Virol
Year 2002
Volume 76
Pages 1349-58
Authors Yoshimura K, Kato R, Kavlick MF, Nguyen A, Maroun V, Maeda K, Hussain KA, Ghosh AK, Gulnik SV, Erickson JW, Mitsuya H
Title A potent human immunodeficiency virus type 1 protease inhibitor, UIC-94003 (TMC-126), and selection of a novel (A28S) mutation in the protease active site.
Related PDB
Related UniProtKB
[84]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID 11790852
Journal Protein Sci
Year 2002
Volume 11
Pages 418-29
Authors King NM, Melnick L, Prabu-Jeyabalan M, Nalivaika EA, Yang SS, Gao Y, Nie X, Zepp C, Heefner DL, Schiffer CA
Title Lack of synergy for inhibitors targeting a multi-drug-resistant HIV-1 protease.
Related PDB 1k6c 1k6p 1k6t 1k6v
Related UniProtKB
[85]
Resource
Comments
Medline ID
PubMed ID 12237461
Journal Protein Sci
Year 2002
Volume 11
Pages 2393-402
Authors Piana S, Carloni P, Rothlisberger U
Title Drug resistance in HIV-1 protease: Flexibility-assisted mechanism of compensatory mutations.
Related PDB
Related UniProtKB
[86]
Resource
Comments X-ray crystallography
Medline ID
PubMed ID 12012342
Journal Proteins
Year 2002
Volume 48
Pages 107-16
Authors Mahalingam B, Boross P, Wang YF, Louis JM, Fischer CC, Tozser J, Harrison RW, Weber IT
Title Combining mutations in HIV-1 protease to understand mechanisms of resistance.
Related PDB 1k1t 1k1u 1k2b 1k2c
Related UniProtKB
[87]
Resource
Comments
Medline ID
PubMed ID 12005435
Journal Structure
Year 2002
Volume 10
Pages 369-81
Authors Prabu-Jeyabalan M, Nalivaika E, Schiffer CA
Title Substrate shape determines specificity of recognition for HIV-1 protease: analysis of crystal structures of six substrate complexes.
Related PDB
Related UniProtKB
[88]
Resource
Comments
Medline ID
PubMed ID 12534275
Journal Biochemistry
Year 2003
Volume 42
Pages 631-8
Authors Muzammil S, Ross P, Freire E
Title A major role for a set of non-active site mutations in the development of HIV-1 protease drug resistance.
Related PDB
Related UniProtKB
[89]
Resource
Comments
Medline ID
PubMed ID 12564936
Journal Biochemistry
Year 2003
Volume 42
Pages 1326-33
Authors Zhu Z, Schuster DI, Tuckerman ME
Title Molecular dynamics study of the connection between flap closing and binding of fullerene-based inhibitors of the HIV-1 protease.
Related PDB
Related UniProtKB
[90]
Resource
Comments
Medline ID
PubMed ID 12675950
Journal BMC Struct Biol
Year 2003
Volume 3
Pages 2
Authors Jenwitheesuk E, Samudrala R
Title Improved prediction of HIV-1 protease-inhibitor binding energies by molecular dynamics simulations.
Related PDB
Related UniProtKB
[91]
Resource
Comments
Medline ID
PubMed ID 12644464
Journal J Biol Chem
Year 2003
Volume 278
Pages 19980-5
Authors Bhavesh NS, Sinha R, Mohan PM, Hosur RV
Title NMR elucidation of early folding hierarchy in HIV-1 protease.
Related PDB
Related UniProtKB
[92]
Resource
Comments
Medline ID
PubMed ID 12933791
Journal J Biol Chem
Year 2003
Volume 278
Pages 43311-9
Authors Ishima R, Torchia DA, Lynch SM, Gronenborn AM, Louis JM
Title Solution structure of the mature HIV-1 protease monomer: insight into the tertiary fold and stability of a precursor.
Related PDB
Related UniProtKB
[93]
Resource
Comments
Medline ID
PubMed ID 12696052
Journal Proteins
Year 2003
Volume 51
Pages 409-22
Authors Kurt N, Scott WR, Schiffer CA, Haliloglu T
Title Cooperative fluctuations of unliganded and substrate-bound HIV-1 protease: a structure-based analysis on a variety of conformations from crystallography and molecular dynamics simulations.
Related PDB
Related UniProtKB
[94]
Resource
Comments
Medline ID
PubMed ID 15317462
Journal J Med Chem
Year 2004
Volume 47
Pages 4507-16
Authors Fornabaio M, Spyrakis F, Mozzarelli A, Cozzini P, Abraham DJ, Kellogg GE
Title Simple, intuitive calculations of free energy of binding for protein-ligand complexes. 3. The free energy contribution of structural water molecules in HIV-1 protease complexes.
Related PDB
Related UniProtKB
[95]
Resource
Comments
Medline ID
PubMed ID 15184023
Journal J Mol Biol
Year 2004
Volume 340
Pages 67-79
Authors Levy Y, Caflisch A, Onuchic JN, Wolynes PG
Title The folding and dimerization of HIV-1 protease: evidence for a stable monomer from simulations.
Related PDB
Related UniProtKB
[96]
Resource
Comments
Medline ID
PubMed ID 15066436
Journal J Mol Biol
Year 2004
Volume 338
Pages 341-52
Authors Tie Y, Boross PI, Wang YF, Gaddis L, Hussain AK, Leshchenko S, Ghosh AK, Louis JM, Harrison RW, Weber IT
Title High resolution crystal structures of HIV-1 protease with a potent non-peptide inhibitor (UIC-94017) active against multi-drug-resistant clinical strains.
Related PDB
Related UniProtKB
[97]
Resource
Comments
Medline ID
PubMed ID 14990731
Journal J Virol
Year 2004
Volume 78
Pages 3123-32
Authors Logsdon BC, Vickrey JF, Martin P, Proteasa G, Koepke JI, Terlecky SR, Wawrzak Z, Winters MA, Merigan TC, Kovari LC
Title Crystal structures of a multidrug-resistant human immunodeficiency virus type 1 protease reveal an expanded active-site cavity.
Related PDB
Related UniProtKB
[98]
Resource
Comments
Medline ID
PubMed ID 15289598
Journal Proc Natl Acad Sci U S A
Year 2004
Volume 101
Pages 11640-5
Authors Fernandez A, Rogale K, Scott R, Scheraga HA
Title Inhibitor design by wrapping packing defects in HIV-1 proteins.
Related PDB
Related UniProtKB
[99]
Resource
Comments
Medline ID
PubMed ID 15044738
Journal Protein Sci
Year 2004
Volume 13
Pages 1108-23
Authors Perryman AL, Lin JH, McCammon JA
Title HIV-1 protease molecular dynamics of a wild-type and of the V82F/I84V mutant: possible contributions to drug resistance and a potential new target site for drugs.
Related PDB
Related UniProtKB
[100]
Resource
Comments
Medline ID
PubMed ID 14739332
Journal Protein Sci
Year 2004
Volume 13
Pages 513-28
Authors Trylska J, Grochowski P, McCammon JA
Title The role of hydrogen bonding in the enzymatic reaction catalyzed by HIV-1 protease.
Related PDB
Related UniProtKB

Comments
The protein, POL polyprotein from HIV-1, is composed of the following enzymes, protease (E.C. 3.4.23.16), reverse transcriptase (E.C. 2.7.7.49), ribonuclease H (E.C. 3.1.26.4) and integrase.
This entry corresponds to the protease domain, which belongs to the peptidase family-A2.
According to the literature, this enzyme has got a similar catalytic mechanism to that of pepsin (D00436 in EzCatDB).

Created Updated
2004-03-05 2012-07-03