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PubMed ID | 3069841 |
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Journal | J Biochem (Tokyo) |
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Year | 1988 |
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Volume | 104 |
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Pages | 679-80 |
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Authors | Katsube Y, Tanaka N, Takenaka A, Yamada T, Oshima T |
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Title | Crystallization and preliminary X-ray data for 3-isopropylmalate dehydrogenase of Thermus thermophilus. |
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[2] |
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Comments | X-ray crystallography |
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PubMed ID | 2277037 |
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Journal | J Biochem (Tokyo) |
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Year | 1990 |
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Volume | 108 |
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Pages | 449-56 |
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Authors | Yamada T, Akutsu N, Miyazaki K, Kakinuma K, Yoshida M, Oshima T |
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Title | Purification, catalytic properties, and thermal stability of threo-Ds-3-isopropylmalate dehydrogenase coded by leuB gene from an extreme thermophile, Thermus thermophilus strain HB8. |
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[3] |
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PubMed ID | 1901851 |
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Journal | J Biochem (Tokyo) |
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Year | 1991 |
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Volume | 109 |
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Pages | 1-2 |
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Authors | Onodera K, Moriyama H, Takenaka A, Tanaka N, Akutsu N, Muro M, Oshima T, Imada K, Sato M, Katsube Y |
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Title | Crystallization and preliminary X-ray studies of a Bacillus subtilis and Thermus thermophilus HB8 chimeric 3-isopropylmalate dehydrogenase. |
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[4] |
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Comments | X-RAY CRYSTALLOGRAPHY (2.2 ANGSTROMS) |
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Medline ID | 92085286 |
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PubMed ID | 1748999 |
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Journal | J Mol Biol |
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Year | 1991 |
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Volume | 222 |
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Pages | 725-38 |
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Authors | Imada K, Sato M, Tanaka N, Katsube Y, Matsuura Y, Oshima T |
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Title | Three-dimensional structure of a highly thermostable enzyme, 3-isopropylmalate dehydrogenase of Thermus thermophilus at 2.2 A resolution. |
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Related PDB | 1ipd |
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Related UniProtKB | P61495 |
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[5] |
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Comments | Homologous enzyme |
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PubMed ID | 1888729 |
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Journal | Biochemistry |
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Year | 1991 |
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Volume | 30 |
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Pages | 8671-8 |
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Authors | Hurley JH, Dean AM, Koshland DE Jr, Stroud RM |
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Title | Catalytic mechanism of NADP(+)-dependent isocitrate dehydrogenase: implications from the structures of magnesium-isocitrate and NADP+ complexes. |
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PubMed ID | 1400259 |
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Journal | J Biochem (Tokyo) |
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Year | 1992 |
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Volume | 112 |
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Pages | 173-4 |
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Authors | Sakurai M, Onodera K, Moriyama H, Matsumoto O, Tanaka N, Numata K, Imada K, Sato M, Katsube Y, Oshima T |
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Title | Crystallization and preliminary X-ray studies of a Bacillus subtilis and Thermus thermophilus HB8 chimeric 3-isopropylmalate dehydrogenase and thermostable mutants of it. |
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[7] |
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PubMed ID | 8405446 |
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Journal | FEBS Lett |
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Year | 1993 |
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Volume | 332 |
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Pages | 37-8 |
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Authors | Miyazaki K, Oshima T |
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Title | Tyr-139 in Thermus thermophilus 3-isopropylmalate dehydrogenase is involved in catalytic function. |
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[8] |
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PubMed ID | 8029202 |
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Journal | Protein Eng |
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Year | 1994 |
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Volume | 7 |
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Pages | 453-9 |
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Authors | Onodera K, Sakurai M, Moriyama H, Tanaka N, Numata K, Oshima T, Sato M, Katsube Y |
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Title | Three-dimensional structures of chimeric enzymes between Bacillus subtilis and Thermus thermophilus 3-isopropylmalate dehydrogenases. |
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[9] |
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Comments | X-ray crystallography |
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PubMed ID | 7881901 |
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Journal | Structure |
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Year | 1994 |
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Volume | 2 |
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Pages | 1007-16 |
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Authors | Hurley JH, Dean AM |
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Title | Structure of 3-isopropylmalate dehydrogenase in complex with NAD+: ligand-induced loop closing and mechanism for cofactor specificity. |
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Related PDB | 1hex |
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[10] |
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PubMed ID | 8140100 |
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Journal | Protein Eng |
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Year | 1994 |
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Volume | 7 |
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Pages | 99-102 |
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Authors | Miyazaki K, Kadono S, Sakurai M, Moriyama H, Tanaka N, Oshima T |
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Title | Chemical modification and site-directed mutagenesis of Tyr36 of 3-isopropylmalate dehydrogenase from Thermus thermophilus HB8. |
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[11] |
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PubMed ID | 7590327 |
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Journal | Gene |
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Year | 1995 |
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Volume | 164 |
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Pages | 85-7 |
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Authors | Kryger G, Wallon G, Lovett ST, Ringe D, Petsko GA |
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Title | Revision of the amino-acid sequence of 3-isopropylmalate dehydrogenase from Salmonella typhimurium by means of X-ray crystallography. |
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[12] |
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PubMed ID | 8576088 |
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Journal | J Biochem (Tokyo) |
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Year | 1995 |
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Volume | 118 |
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Pages | 745-52 |
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Authors | Kadono S, Sakurai M, Moriyama H, Sato M, Hayashi Y, Oshima T, Tanaka N |
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Title | Ligand-induced changes in the conformation of 3-isopropylmalate dehydrogenase from Thermus thermophilus. |
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[13] |
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PubMed ID | 7608131 |
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Journal | J Biochem (Tokyo) |
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Year | 1995 |
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Volume | 117 |
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Pages | 408-13 |
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Authors | Moriyama H, Onodera K, Sakurai M, Tanaka N, Kirino-Kagawa H, Oshima T, Katsube Y |
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Title | The crystal structures of mutated 3-isopropylmalate dehydrogenase from Thermus thermophilus HB8 and their relationship to the thermostability of the enzyme. |
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[14] |
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PubMed ID | 8637845 |
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Journal | Protein Eng |
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Year | 1995 |
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Volume | 8 |
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Pages | 763-7 |
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Authors | Sakurai M, Moriyama H, Onodera K, Kadono S, Numata K, Hayashi Y, Kawaguchi J, Yamagishi A, Oshima T, Tanaka N |
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Title | The crystal structure of thermostable mutants of chimeric 3-isopropylmalate dehydrogenase, 2T2M6T. |
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Related PDB | 1xac,1xad |
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[15] |
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PubMed ID | 8535253 |
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Journal | Protein Sci |
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Year | 1995 |
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Volume | 4 |
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Pages | 2156-67 |
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Authors | Dean AM, Dvorak L |
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Title | The role of glutamate 87 in the kinetic mechanism of Thermus thermophilus isopropylmalate dehydrogenase. |
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[16] |
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PubMed ID | 7773180 |
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Journal | Protein Sci |
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Year | 1995 |
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Volume | 4 |
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Pages | 84-92 |
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Authors | Zhang T, Koshland DE Jr |
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Title | Modeling substrate binding in Thermus thermophilus isopropylmalate dehydrogenase. |
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[17] |
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Comments | X-ray crystallography |
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Journal | Acta Crystallogr D Biol Crystallogr |
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Year | 1996 |
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Volume | 52 |
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Pages | 124-8 |
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Authors | Sakurai M, Ohzeki M, Miyazaki K, Moriyama H, Sato M, Tanaka N, Oshima T |
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Title | Structure of a loop-deleted variant of 3-isopropylmalate dehydrogenase from Thermus thermophilus: An internal reprieve tolerance mechanism. |
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Related PDB | 1idm |
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[18] |
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PubMed ID | 8875643 |
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Journal | Protein Eng |
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Year | 1996 |
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Volume | 9 |
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Pages | 663-70 |
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Authors | Magyar C, Szilagyi A, Zavodszky P |
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Title | Relationship between thermal stability and 3-D structure in a homology model of 3-isopropylmalate dehydrogenase from Escherichia coli. |
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[19] |
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PubMed ID | 15299625 |
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Journal | Acta Crystallogr D Biol Crystallogr |
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Year | 1996 |
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Volume | 52 |
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Pages | 623-30 |
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Authors | Nagata C |
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Title | Cryocrystallography of 3-Isopropylmalate Dehydrogenase from Thermus thermophilus and its Chimeric Enzyme. |
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Related PDB | 1xaa,1xab |
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[20] |
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Comments | X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS) |
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Medline ID | 98158316 |
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PubMed ID | 9498551 |
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Journal | J Biochem (Tokyo) |
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Year | 1997 |
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Volume | 122 |
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Pages | 1092-104 |
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Authors | Tsuchiya D, Sekiguchi T, Takenaka A |
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Title | Crystal structure of 3-isopropylmalate dehydrogenase from the moderate facultative thermophile, Bacillus coagulans: two strategies for thermostabilization of protein structures. |
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Related PDB | 1ayq,2ayq |
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Related UniProtKB | P12010 |
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[21] |
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Comments | X-RAY CRYSTALLOGRAPHY (2.27 ANGSTROMS) |
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Medline ID | 97240818 |
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PubMed ID | 9086278 |
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Journal | J Mol Biol |
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Year | 1997 |
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Volume | 266 |
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Pages | 1016-31 |
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Authors | Wallon G, Kryger G, Lovett ST, Oshima T, Ringe D, Petsko GA |
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Title | Crystal structures of Escherichia coli and Salmonella typhimurium 3-isopropylmalate dehydrogenase and comparison with their thermophilic counterpart from Thermus thermophilus. |
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Related UniProtKB | P61495 |
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[22] |
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Comments | X-ray crystallography |
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PubMed ID | 9051733 |
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Journal | Protein Eng |
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Year | 1997 |
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Volume | 10 |
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Pages | 45-52 |
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Authors | Qu C, Akanuma S, Moriyama H, Tanaka N, Oshima T |
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Title | A mutation at the interface between domains causes rearrangement of domains in 3-isopropylmalate dehydrogenase. |
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Related PDB | 1osi,1osj |
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[23] |
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PubMed ID | 9278279 |
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Journal | Protein Eng |
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Year | 1997 |
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Volume | 10 |
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Pages | 665-72 |
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Authors | Wallon G, Lovett ST, Magyar C, Svingor A, Szilagyi A, Zavodszky P, Ringe D, Petsko GA |
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Title | Sequence and homology model of 3-isopropylmalate dehydrogenase from the psychrotrophic bacterium Vibrio sp. I5 suggest reasons for thermal instability. |
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[24] |
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PubMed ID | 9761923 |
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Journal | Acta Crystallogr D Biol Crystallogr |
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Year | 1998 |
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Volume | 54 |
---|
Pages | 444-5 |
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Authors | Suzuki T, Moriyama H, Hirose R, Sakurai M, Tanaka N, Oshima T |
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Title | Crystallization and preliminary X-ray studies on the hyperstable 3-isopropylmalate dehydrogenase from the thermoacidophilic archaeon Sulfolobus sp. strain 7. |
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[25] |
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PubMed ID | 9636162 |
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Journal | Proc Natl Acad Sci U S A |
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Year | 1998 |
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Volume | 95 |
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Pages | 7406-11 |
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Authors | Zavodszky P, Kardos J, Svingor, Petsko GA |
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Title | Adjustment of conformational flexibility is a key event in the thermal adaptation of proteins. |
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[26] |
---|
Comments | X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS) |
---|
Medline ID | 98416693 |
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PubMed ID | 9739088 |
---|
Journal | Structure |
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Year | 1998 |
---|
Volume | 6 |
---|
Pages | 971-82 |
---|
Authors | Imada K, Inagaki K, Matsunami H, Kawaguchi H, Tanaka H, Tanaka N, Namba K |
---|
Title | Structure of 3-isopropylmalate dehydrogenase in complex with 3-isopropylmalate at 2.0 A resolution: the role of Glu88 in the unique substrate-recognition mechanism. |
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Related PDB | 1a05 |
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Related UniProtKB | Q56268 |
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[27] |
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PubMed ID | 10683439 |
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Journal | FEBS Lett |
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Year | 2000 |
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Volume | 468 |
---|
Pages | 48-52 |
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Authors | Nemeth A, Svingor A, Pocsik M, Dobo J, Magyar C, Szilagyi A, Gal P, Zavodszky P |
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Title | Mirror image mutations reveal the significance of an intersubunit ion cluster in the stability of 3-isopropylmalate dehydrogenase. |
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[28] |
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PubMed ID | 10989439 |
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Journal | Methods Enzymol |
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Year | 2000 |
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Volume | 324 |
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Pages | 301-22 |
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Authors | Hayashi-Iwasaki Y, Oshima T |
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Title | Purification and characterization of recombinant 3-isopropylmalate dehydrogenases from Thermus thermophilus and other microorganisms. |
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[29] |
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PubMed ID | 10964981 |
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Journal | Protein Eng |
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Year | 2000 |
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Volume | 13 |
---|
Pages | 527-33 |
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Authors | Hori T, Moriyama H, Kawaguchi J, Hayashi-Iwasaki Y, Oshima T, Tanaka N |
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Title | The initial step of the thermal unfolding of 3-isopropylmalate dehydrogenase detected by the temperature-jump Laue method. |
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[30] |
---|
Comments | X-RAY CRYSTALLOGRAPHY (2.2 ANGSTROMS) |
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Medline ID | 20272095 |
---|
PubMed ID | 10810156 |
---|
Journal | Protein Eng |
---|
Year | 2000 |
---|
Volume | 13 |
---|
Pages | 253-8 |
---|
Authors | Nurachman Z, Akanuma S, Sato T, Oshima T, Tanaka N |
---|
Title | Crystal structures of 3-isopropylmalate dehydrogenases with mutations at the C-terminus: crystallographic analyses of structure-stability relationships. |
---|
Related PDB | 1dpz,1dr0,1dr8 |
---|
Related UniProtKB | P61495 |
---|
[31] |
---|
Comments | X-ray crystallography |
---|
PubMed ID | 11173468 |
---|
Journal | Acta Crystallogr D Biol Crystallogr |
---|
Year | 2001 |
---|
Volume | 57 |
---|
Pages | 225-32 |
---|
Authors | Qu C, Akanuma S, Tanaka N, Moriyama H, Oshima T |
---|
Title | Design, X-ray crystallography, molecular modelling and thermal stability studies of mutant enzymes at site 172 of 3-isopropylmalate dehydrogenase from Thermus thermophilus. |
---|
Related PDB | 1g2u,1gc8,1gc9 |
---|
[32] |
---|
PubMed ID | 11369782 |
---|
Journal | J Biol Chem |
---|
Year | 2001 |
---|
Volume | 276 |
---|
Pages | 28121-5 |
---|
Authors | Svingor A, Kardos J, Hajdu I, Nemeth A, Zavodszky P |
---|
Title | A better enzyme to cope with cold. Comparative flexibility studies on psychrotrophic, mesophilic, and thermophilic IPMDHs. |
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[33] |
---|
PubMed ID | 11297665 |
---|
Journal | Protein Eng |
---|
Year | 2001 |
---|
Volume | 14 |
---|
Pages | 81-4 |
---|
Authors | Hirose R, Suzuki T, Moriyama H, Sato T, Yamagishi A, Oshima T, Tanaka N |
---|
Title | Crystal structures of mutants of Thermus thermophilus IPMDH adapted to low temperatures. |
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[34] |
---|
PubMed ID | 11297666 |
---|
Journal | Protein Eng |
---|
Year | 2001 |
---|
Volume | 14 |
---|
Pages | 85-91 |
---|
Authors | Suzuki T, Yasugi M, Arisaka F, Yamagishi A, Oshima T |
---|
Title | Adaptation of a thermophilic enzyme, 3-isopropylmalate dehydrogenase, to low temperatures. |
---|